Daniel Bunis

This work is underway, and function and input names are all subject to potentially change until merged into `devel`. But as this also seems to be a major hole in...

One thing to note, and I'll aim to work this into the documentation, is that the algorithm I'm basing the `calcNeighborMetadataDiversity()` calculation off of made use of a NearestNeighbors calculation...

Hmmm, nothing built-in for this, but you could achieve it by using `data.out = TRUE` and then both transposing the `mat` as well as flipping any of the inputs that...

Just re-read and noticed that you'd added "(not transpose)", so unsure if I've answered your intended question?

Hmmm very odd and I'm tempted to say yes, it might be a macOS/Quartz related issue but only because I don't have another explanation. I think of `dittoHeatmap()` as "just"...

Should work, yep. `annotation_colors` just needs to look something like this. `labels` needs to be the name of the element in the list, and then label1, label2, etc. should match...

Oh! You're right. Looking further, the [commit](https://github.com/SingleR-inc/SingleR/commit/a5d73f6792c3462fb859df7c944362e29ced6a1f) where the `...` machinery was added happened after the last Bioconductor release, so it's likely that it's only a feature in the devel...

Hmmm, that's certainly not right! I feel like I've seen something like this before, and the cause may have been some missing data, but I don't remember. You can try...

Oh, could be related to data size... That sounds like it fits the bill. How many cells? It does sound like the internal calculations run fine (see correction for my...

Very curious if you have gotten a chance to try this heatmap generation with the matrix simplification afforded by adding `complex = TRUE, raster_resize_mat = TRUE` per my message above!...