Harshil Patel
Harshil Patel
Did you ever manage to figure this one out @EFEXP ?
Hi @ojziff ! I agree this would be an awesome feature but I suspect we would need a separate sub-workflow to get a small sub-sample of reads, align and then...
I have made a start to solve this [here](https://github.com/drpatelh/nf-core-rnaseq/commit/0d760d26aeab37765e6b45720df17a6f3f92b01f) but it still needs a little more work and discussion. Some linked comments on Slack [here](https://nfcore.slack.com/archives/CE8SSJV3N/p1646683233063859)
Hi @pfgherardini ! It would be a good to get a gauge of exactly how many resources are required to index the human genome? We can attempt to bump the...
@mashehu want to merge this but there is nothing to merge! 😅
Agree too! Will be in the next release.
Fixed in https://github.com/nf-core/rnaseq/pull/874/commits/a4be75f4cc55c19ae8a1df34cfa8acc7afc0853e
Hi @jambler24 ! Apologies for the late response! I have had a look at the [`deseq2_qc.r` script](https://github.com/nf-core/rnaseq/blob/master/bin/deseq2_qc.r#L39) and it appears like we have defined a parameter for `--cores` but we...
Tried to go down this rabbit hole just now but I couldn't find which bit of the script is requesting all of those CPUs in order to change the behaviour.
Thanks @drejom ! So the untarring issues are resolved with 0b4b140 but this will take quite a bit of re-factoring to pass this option to all modules that are untarring....