Matthew clark

pubchempy missing results available on the pubchem web page

2

pubchempy.get_compounds('NSC231854', 'name') results in an empty list, yet searching the same string on the pubchem web page gives [NSC231854; NSC-231854](https://pubchem.ncbi.nlm.nih.gov/substance/567558) Substance SID: [567558](https://pubchem.ncbi.nlm.nih.gov/substance/567558) Data Source: [DTP/NCI](https://pubchem.ncbi.nlm.nih.gov/source/DTP/NCI) External ID: 231854 Data...

AttributeError: 'Engine' object has no attribute 'cursor'

5

following conda install instructions the system throws an error when computing humanness AttributeError: 'Engine' object has no attribute 'cursor' [2024-02-06 13:58:11,833: ERROR/ForkPoolWorker-14] Task biophi.humanization.web.tasks.humanness_task[9fe7dc93-8651-49ab-baec-f3a0386376f5] raised unexpected: HumannessTaskError("'Engine' object has no...

implementing self-calibration

3

I've implemented a self calibration. It depends on the computer clock being regulated to at least one second per day. On Linux systems NTPD regulates the time far more accurately....

behaivior: - just import tmap to reproduce. using python3.6 for compatibility; it used to work. (tmap) mclark@metzora:~$ python Python 3.6.13 |Anaconda, Inc.| (default, Jun 4 2021, 14:25:59) [GCC 7.5.0] on...