Mark Farman

Results 13 issues of Mark Farman

No really an "issue" but a question: does the "m" parameter calculated in the cv.lpca function correspond to anything meaningful in the data, or the output. The reason, I ask...

Once you link models, sites and/or trees in BEAUTI 2.6.3 for OS X, it's not possible to unlink them without losing partitions. As an example, if I try to unlink...

MEDIUM priority
defect
BEAUti
OS: Mac
regression

INFO: BEAGLE function, create, returned error code -6 (No resource matches requirements) Fatal exception: No acceptable BEAGLE library plugins found. Make sure that BEAGLE is properly installed or try changing...

pip install argweaver throws this error ```bash $ pip install argweaver Collecting argweaver Using cached argweaver-0.8.1.tar.gz (1.1 MB) Preparing metadata (setup.py) ... error error: subprocess-exited-with-error × python setup.py egg_info did...

Surprised to get the following error with what does not seem like a huge amount of data. Halved the number of samples (and tried separate runs with both halves) and...

Please don't imply that Megalodon processes raw read data - it processes fast5 file format. If one needs to process the .raw files from Nanopore sequencing, Google searching leads one...

Please provide instructions for installing on OS X.

Running library("treespace") crashes RStudio 2023.12.1+402 running R 4.3.2 on OS X 13.2.1.

Environment is non-solvable

This question has been posted in a number of forums but the solutions are unacceptable and/or non-functional. Perhaps one of the most basic needed functions in ggtree is to color...