Mark Farman

icon company University of Kentucky icon location Lexington, KY icon location Professor, Dept. of Plant Pathology

Results 6 comments of Mark Farman

geom_hilight

Ideally geom-hilights should automatically be placed behind all tree features by default.

geom_hilight

Thanks Brad, that’s what I did to solve the issue. However, it seems to me that a geom_hilight call (if possible) ought to put the feature in the background by...

Specifying tree height and width

Plot without coord_fixed(ratio = 2): ![Image](https://github.com/user-attachments/assets/6dbe03ec-a94b-4ee4-a46a-2bf45f836b03) Plot with coord_fixed(ratio = 2): ![Image](https://github.com/user-attachments/assets/bff208b9-e0a1-4ab0-8450-d945f973e168) Note the strange behavior and how the y-axis didn't expand to fit page.

theme(plot.margin) doesn't work for ggbreak

coord_cartesian(clip="off") also fails

"funannotate remote -m phobius" stops processing my file

I have the same problem...

"funannotate remote -m phobius" stops processing my file

Thanks for the quick feedback Jon. I have a quick followup question. Antismash also failed but at the retrieving results stage. I have been able to run Phobius locally. Assuming...