drabe004

Hi! We ran it with the current version and we got this error. [Dec 13 12:14 PM]: OS: CentOS Linux 7, 128 cores, ~ 528 GB RAM. Python: 3.7.11 [Dec...

Hi! We did the pip install as noted above, re-ran it and again got an eggnog issue. See here: [Dec 19 11:50 AM]: OS: CentOS Linux 7, 128 cores, ~...

Does it matter that the genome annotation was done with the previous version (1.8.5)?

by annotation I mean funannotate predict

Hey Jon, Sure, its detected V 2.1.1 [12/19/21 12:30:53]: Parsing EggNog Annotations [12/19/21 12:30:53]: EggNog version parsed as 2.1.1-1 [12/19/21 12:30:53]: EggNog annotation detected as emapper v2.1.1-1 and DB prefix...

Hi Jon, I downloaded a local and current version of eggnog, ran eggnog and used the --eggnog flag to run annotate. This time I got an error wih SignalP: [Dec...

Hi Jon! Thanks for getting back to me! I was looking to use it more like BUSCO, to compare the quality of all the genomes we are using in an...

Hi Jon! I thought I'd reach out again as I'm having some issues with the funnannotate file formatting. It gives me a nice GBK file with all the things in...

Yes , for example if I want the CDS from the refseq FTP I would Wget https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/035/GCF_000002035.6_GRCz11/GCF_000002035.6_GRCz11_cds_from_genomic.fna.gz And that file (and all CDS files from genbank) are formatted in the...

Hmmm yes I see those files there but the headers are all formatted as FUN000001 And then there is a key file (something like fun-gene-names) that tells me which Funnanoate...