dondi

Network mode will not be a selectable option, it will just be informational

5

We have started to integrate PPI more closely into the application but there are some loose ends. Primarily, we should through what should happen when the user changes network type;...

Include test coverage results in GitHub Action CI script

19

In addition to running tests, we should start recapturing coverage results from the tests (formerly handled by Coveralls) and include this in the script as well. Per #1146, once we...

Port database loading scripts to AllianceMine

67

Now that InterMine is no more, we need to port our loading scripts to AllianceMine

Update client-side testing document for PPI-related changes

6

Upcoming v7.2.0 consists mostly of bug fixes but there are some functional changes due to broadened PPI support. These should be reflected in the latest client-side testing JSON and document

Add annotation_type to our database

2

From #1120, we have identified that we should capture the annotation_type field

Attach timestamps to genes

3

Emerging from the discussion of #1120, we have resolved that the gene table should itself have a timestamp. Even if a high percentage of genes will be the same from...

Hook up GitHub Actions results to badge in README

2

When GitHub Actions run, it would be good to see the updated badge(s) for them live

Include `npm lint` in GitHub Action CI script

1

In addition to running the test suite, running our lint checker will help us catch formatting issues on an on-going basis

Gain compatibility with Node 20.x and higher

3

Per @akaiap in #1118, our current code relies on a `canvas` library that stops compatibility at Node 18.x. We want to broaden our compatibility to newer versions

Establish how the React app will invoke the existing API

3

Continuing our buildout, we should establish how the React app communicates with the existing API