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The Open File functionality needs to support PPIs more “natively” than they do now. Specifically: * only .xlsx and .sif should be allowed for PPI, not .graphml * check .sif...

As noted in #1054 the new network type needs a new parallel set of tests for various functionalities

Review library dependencies and confirm compatible/incompatible upgrades

22

GRNsight should occasionally look at the libraries we use and determine compatibility with the latest versions. Typical milestones are: - Closing out a major new version of GRNsight - Known...

Look into Coveralls integration

2

The Coveralls badge remains live but Coveralls itself does not appear to be connected to our repository anymore

Revise GRNsight people page to match GRNmap layout more closely

2

This will avoid the minimum-window-width issue that currently pushes the photo off the second column. - Add carousel (photos in assets/images) - Move photo above investigators+students - Investigators and students...

Implement automatic updating of GRN and PPI network database

1

As a follow-up to #951 we would like to eventually build a layer on top of that work which will periodically or manually update adjacency matrix data from their primary...

Integrade code formatting specifications into the GRNsight repo

2

The latest code formatters are getting better at formatting code in a reliable and consistent manner. Some implications in case we adopt this for GRNsight: 1. We will want to...

Explain the GRNsight embedding/web service approach

5

It would be worthwhile to write up a wiki page explaining how the GRNsight public pages embed the GRNsight code into themselves. Under the current wiki structure, this can go...

Migrate CI unit-testing and coverage reports to GitHub Actions

1

As seen in #1044 and #1095, our existing use of Travis and Coveralls for automated tests and coverage reports, respectively, has become out of date and potentially no longer feasible...