Ole Johannsen

Looking at the code this should just be a warning and nnUNet should continue. I believe this is just a warning to make sure the user is aware of it...

sorry for the late reply. did you already solve the issue? It appears that there is a file missing...

did you make sure that the corresponding files exist?

Dear Mahdi, sorry for the late reply. Somehow the issue evaded my attention. weight_dice and weight_ce just weight the dice and CE loss in relation to each other. The solution...

Hey, I'm not sure if I fully understand. The individual test sets of the cv folds should be disjoint. How come you have the imagefiles in multiple folds?

could you send us the json files (datset.json, split.json)? and also the commands you used? cheers, Ole

Hey, I could not find the attached files. The commands look good to me. About the dots: is this pattern somehow present in the images? are you talking about the...

Hi @hdnminh , I'm not sure if I get your problem. You have already split your datasets into training and validation? You could just train them on the individual training...

Does https://github.com/MIC-DKFZ/nnUNet/blob/master/documentation/how_to_use_nnunet.md#run-inference help you?

Hello, sorry for the late response. Did you manage to resolve the problem with the documentation? Cheers Ole