ValueError: invalid literal for int() with base 10: 'Task003_Liver' after run nnUNet_plan_and_preprocess -t Task003_Liver --verify_dataset_integrity

[S-yq]

Please read the following resources before posting issues:

Common questions: https://github.com/MIC-DKFZ/nnUNet/blob/master/documentation/common_questions.md

Common Problems and their solutions: https://github.com/MIC-DKFZ/nnUNet/blob/master/documentation/common_problems_and_solutions.md

Expected epoch times and tips on how to identify bottlenecks: https://github.com/MIC-DKFZ/nnUNet/blob/master/documentation/expected_epoch_times.md

[dojoh]

Hello, sorry for the late response. Did you manage to resolve the problem with the documentation?

Cheers Ole

[zigo233]

Hi, I got a problem like your case. Have you ever tried skipping the “verify_dataset_integrity”？