RuntimeError: Could not find a dataset with the ID 2.

[neu-null]

Fingerprint extraction... Traceback (most recent call last): File "/root/anaconda3/envs/umamba/bin/nnUNetv2_plan_and_preprocess", line 33, in sys.exit(load_entry_point('nnunetv2==2.1.1', 'console_scripts', 'nnUNetv2_plan_and_preprocess')()) File "/root/anaconda3/envs/umamba/lib/python3.10/site-packages/nnunetv2-2.1.1-py3.10.egg/nnunetv2/experiment_planning/plan_and_preprocess_entrypoints.py", line 182, in plan_and_preprocess_entry extract_fingerprints(args.d, args.fpe, args.npfp, args.verify_dataset_integrity, args.clean, args.verbose) File "/root/anaconda3/envs/umamba/lib/python3.10/site-packages/nnunetv2-2.1.1-py3.10.egg/nnunetv2/experiment_planning/plan_and_preprocess_api.py", line 47, in extract_fingerprints extract_fingerprint_dataset(d, fingerprint_extractor_class, num_processes, check_dataset_integrity, clean, File "/root/anaconda3/envs/umamba/lib/python3.10/site-packages/nnunetv2-2.1.1-py3.10.egg/nnunetv2/experiment_planning/plan_and_preprocess_api.py", line 26, in extract_fingerprint_dataset dataset_name = convert_id_to_dataset_name(dataset_id) File "/root/anaconda3/envs/umamba/lib/python3.10/site-packages/nnunetv2-2.1.1-py3.10.egg/nnunetv2/utilities/dataset_name_id_conversion.py", line 48, in convert_id_to_dataset_name raise RuntimeError(f"Could not find a dataset with the ID {dataset_id}. Make sure the requested dataset ID " RuntimeError: Could not find a dataset with the ID 2. Make sure the requested dataset ID exists and that nnU-Net knows where raw and preprocessed data are located (see Documentation - Installation). Here are your currently defined folders: nnUNet_preprocessed=/data1/dataset/nnUNet_preprocessed nnUNet_results=/data1/dataset/nnUNet_results nnUNet_raw=/data1/dataset/nnUNet_raw

Best Regards

[dojoh]

sorry for the late reply. did you already solve the issue? It appears that there is a file missing...

[SiruLiu645]

hi，have you solved this problem？I meet the same problem now.

[dojoh]

did you make sure that the corresponding files exist?

[SiruLiu645]

I solved this problem，thank you！

----- 原始邮件 ----- 发件人: "dojoh" @.> 收件人: "MIC-DKFZ/nnUNet" @.> 抄送: "SiruLiu645" @.>, "Comment" @.> 发送时间: 星期一, 2024年 5 月 06日 下午 7:04:23 主题: Re: [MIC-DKFZ/nnUNet] RuntimeError: Could not find a dataset with the ID 2. (Issue #1890)

did you make sure that the corresponding files exist?

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[Jchanel-1]

Hi! I met the problem too. How to solve this problem? I use the private RGB dataset! nnUNetv2_plan_and_preprocess -d 501 --verify_dataset_integrityFingerprint extraction... Traceback (most recent call last): File "/home/jjj/miniconda3/envs/lu2/bin/nnUNetv2_plan_and_preprocess", line 8, in sys.exit(plan_and_preprocess_entry()) File "/data/jjj/nnUNet/nnunetv2/experiment_planning/plan_and_preprocess_entrypoints.py", line 184, in plan_and_preprocess_entry extract_fingerprints(args.d, args.fpe, args.npfp, args.verify_dataset_integrity, args.clean, args.verbose) File "/data/jjj/nnUNet/nnunetv2/experiment_planning/plan_and_preprocess_api.py", line 47, in extract_fingerprints extract_fingerprint_dataset(d, fingerprint_extractor_class, num_processes, check_dataset_integrity, clean, File "/data/jjj/nnUNet/nnunetv2/experiment_planning/plan_and_preprocess_api.py", line 26, in extract_fingerprint_dataset dataset_name = convert_id_to_dataset_name(dataset_id) File "/data/jjj/nnUNet/nnunetv2/utilities/dataset_name_id_conversion.py", line 48, in convert_id_to_dataset_name raise RuntimeError(f"Could not find a dataset with the ID {dataset_id}. Make sure the requested dataset ID " RuntimeError: Could not find a dataset with the ID 501. Make sure the requested dataset ID exists and that nnU-Net knows where raw and preprocessed data are located (see Documentation - Installation). Here are your currently defined folders: