Delaney Nolin

snakemake errors when running sgc

3

hello - I have gotten SGC installed and all the tests have worked well. Now I am trying to use my own data (viral reads & contigs) and I'm getting...

Floating point exception error (core dumped) running super5

1

Hello, I am trying to align my protein sequences and it runs well for a while but then it throws this error: Floating point exception (core dumped) Floating point exception...

Paired read prediction - mergereads failed

3

## Expected Behavior Hello, I am trying to run PLASS on a curated set of marine viral metagenomic reads. I have two read files, and I am trying to run...

issues installing databases

3

Hello! I am getting this issue when installing the databases using this command: command: /home/delaney/miniconda3/bin/krakenuniq-download --db DBDIR --threads 10 --dust refseq/bacteria refseq/archaea error: `Error fetching na/na_genomic.fna.gz. Is curl installed? Downloading...

Error

1

Hello, Not sure what is going on with this error, but here is the error: [2023-05-01 16:03 ERROR] See error details in /home/nolin/SPOTV_quals_subset/13_Viral_Contigs/VirSorter2-nolin/log/iter-0/step3-classify/provirus-score-merge.log [Mon May 1 16:03:43 2023] Error in...

final-viral-boundary.tsv file missing

5

Hello, I am trying to import my VS2 results into anvio and it requires the final-viral-boundary tsv file, but the only outputs I got from my run were the final-viral-score.tsv...

Error when rerunning VS2

1

Hello, When I was rerunning VS2, which I installed via conda, it ran for several days before spitting out this error message: `12 merge_split_hmmtbl_by_group 7 merge_split_hmmtbl_by_group_tmp 1 pick_viral_fullseq 844 [2023-03-18...

Stuck on step 3

2

Hello, I have been running VS2 and my code has been running the classify step for over 2 days now, and for ~24 hrs it has been stuck at the...