Delaney Nolin

thanks so much!

Sure, I can provide you a few of the reads if that would help. I had to attach the .fq files s a txt file to get them here. In...

I am having the same issue! `(dvf) delaney@ada:~/software/DeepVirFinder$ ls dvf.py encode.py licence.md models README.md supplementary_tables test train_example training.py (dvf) delaney@ada:~/software/DeepVirFinder$ python dvf.py -i ./test/crAssphage.fa -o ./test/ -l 300 Using Theano...

Thanks! Unfortunately, this took several weeks to run, is there a way to speed up the run to just generate the boundary file? Or do I need to redo the...

my original command for context was: virsorter run --prep-for-dramv -w ${VirSorter_RESULTS} -i ${FINAL_ASSEMBLY} -j 40 --provirus-off run in the vs2 bioconda env

ah gotcha, thanks so much!!

There shouldn't be! It's running on our remote server but usage is consistently below ~60% and there is enough storage for the files

I would also love a copy of this code - I am in a similar situation where I have a list of taxids in a text file that I want...