dashing
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dnbaker
Fast and accurate genomic distances using HyperLogLog
As requested in https://github.com/dnbaker/dashing/issues/32, and moving toward better feature parity with Mash, this would involve producing differing computation modes suited to pre-filter for similar items.
Hello, I've been using protein k-mers from sourmash to compare single-cell RNA-seq profiles across different species. I'm curious to benchmark `dashing` for this purpose as well. Warmest, Olga
Hi and thanks for making `dashing`. I would like to package `dashing` to use as a package in the Julia programming language. However, it is not easy to build `dashing`...
Hi, I have just installed the program and tried my first sketch, but I get no result (empty output files) and the message: **Illegal instruction (`core' generated)** Dashing version: v1.0...
Hello Daniel, I am attaching a real-world genome from the global Tara Ocean Metagenomic study, against all GTDB genomes (https://data.ace.uq.edu.au/public/gtdb/data/releases/release207/207.0/genomic_files_reps/gtdb_genomes_reps_r207.tar.gz) to find top 20 best matches in terms of ANI,...
Hi @dnbaker I’m currently working with dashing, performing asymmetric comparisons between sets of genomes using the -F and -Q flags. I’ve noticed that the output generated only includes the labels...
Hi Daniel! I copied a genome in FASTA format into two separate genome files and ran Dashing on them with the following parameters: ``` $ dashing dist -O out.txt -o...
