dashing
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dnbaker
Fast and accurate genomic distances using HyperLogLog
Hi, I have a question about the output from `./dashing cmp –k10 -p5 -C -S24 --wj-exact reference_.fasta reads.fastq` The output i.e. 0.0005 (says that 0.05% of the k-mers in the...
**Dear Daniel， I have some problems in installing dashing. I listed the errors below. Could you give me some suggessions? Thanks.** `make dashing` ``` cd bonsai && make zlib/libz.a &&...
Hi, Trying to use dashing as it seems very useful, thanks. Not sure if this issue belongs here but on my system the bioconda install gives an illegal instruction error:...
Hi, I have a question about the output from HLL, when I use Dashing with HyperLogLog i.e.: **./dashing hll -k15 -p2 -S24 read.fastq reference.fasta** The output from HLL is then:...
Hi,... i have a question about the unique exact matches, can I use the (./dashing hll) not for exact matches, I need to know the whole number of matches, not...
Hi! I'm using the same references (-F) multiple times and thought it would be faster if I'd sketch them once and use only the sketches in the future for querying....
Hi! A small request to help with debugging. When a file does not exist when using `-F`/`-Q` Dashing outputs the following error: ``` terminate called after throwing an instance of...
Hi, I very much look forward to use dashing, however three small issues with how it is distributed made me lose some time during installation: 1) source code is huge...
Currently, dashing emits union sizes with `--sizes`, but not intersection size. You can get to that by subtracting the estimated set cardinality, but it would be preferable to emit it...
Hi again, I've been using dashing as a prefilter for genome dereplication, since it is much faster than FastANI. I'd previously been using mash for this. I've noticed that some...