smallrnaseq

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dict object has no attribute 'has key'

1

Hi Damien, I really appreciate your small rna seq workflow. I am trying to test it for a paired small rna set to bulk rna set. I am running into...

patrickeboada

Dear Damien, I am running smallrnaseq and I got error message in app.py,could you help me!! **smallrnaseq -c default.conf -r** Traceback (most recent call last): File "/home/zhangjun/miniconda3/bin/smallrnaseq", line 8, in...

zero555666

Cannot set sequence. Illegal character in string

1

Dear Damien, I am running smallrnaseq and I got this message in the novel module of the pipeline. ``` predicting novel mirnas.. pooled 6 files into 2162077 unique reads getting...

josecarballo87

Hi, I have been running smallrnaseq with the default.conf options selected to run novel miRNA detection from the reference genome. I keep getting this error - any ideas? makeblastdb: error...

RNJ1993

Docker?

5

Should there be a docker image of this tool?

wangshun1121

Error of installation

1

I found `smallrnaseq` depends on scikit-learn==0.19.1, while the new version of which is 0.22. I can install 0.22 version without error, but unfortunately, 0.19.1 seems not compatible in my computer....

huangwb8