Dylan Cable

I'm not sure but if you send me the object and script, then I can try reproducing the error. Dylan

Hi, I have tracked the issue down to a problem with small numbers of total counts on these pixels (see attached image below). I have updated the code to throw...

Yes, so now this error indicates that something is wrong. Bead is synonymous with pixel (or spot). The `initial_weight_thresh`, set to .01 by default, is the amount of weight a...

The function `run.CSIDE.replicates` looks for differential expression within each section, for genes that replicate across multiple replicates. For the task you are describing of finding DE genes across replicates, the...

The use of `group_ids` is intended for a different problem: estimating population DE (_within_ samples) when there are multiple samples and multiple replicates within each sample. It does not apply...