Dirk-Jan comments

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                                            Dirk-Jan

Braker failed due to no genemark_hintsfile.gff.rnaseq.tmp file

Hi, I get the exact same error @mudithekanayake reports above. However, I have not got my dataset to work with BRAKER before. Also, I tested the test5.sh script with --hints...

K-mer comparison density plot

Thanks a lot for the reply! I haven't manage to create 2d density plots, but the spectra-cn plots are actually way more useful for my purposes of comparing sequencing libraries....

lchain.c:59: mg_chain_backtrack: Assertion `n_v < (2147483647)' failed

Thanks a lot for the possibilities to work around this! It took me a week to try them all out. I found that neither `-n5` nor `-n10` worked for my...

r-base 3.4.3** is uninstallable because it conflicts with any installable versions previously reported.

Nope, sorry, I haven't solved it yet

Top of report.html pages not viewable when page is longer than screen

Thank you for suggesting this workaround! I was able to shorten it to simply running `sed -E 's/([^l]) h-screen/\1/g'` for doing the correct replacements.