Dingquan Yu

icon indicating a website link https://github.com/KosinskiLab/AlphaPulldown

icon company European Molecular Biology Laboratory icon location PhD candidate in computational bio | To test reality we must see it on the tight rope. When the verities become acrobats, we can judge them.

Results 3 comments of Dingquan Yu

Training Dataset

Hi, I managed to resolve the 104 error shown above but then this ReadTimeoutError was reported. Could you maybe increase your default timeout from 60s to something longer? Thanks a...

ValueError: Minimization failed after 100 attempts.

Hi all, I encountered the same problem. complaining about the unit. I'm using openmm 8.1.1 and downgrading to 7.7.0 will crash the pdbfixer imports

a big gap between the pdb results from openfold and alphafold2 (colab)

> I encountered the same issue when running multimer inference for the given example, 2q2k, using openfold-multimer. It didn’t perform as well as the alphafold-multimer (colab version). I used the...