Timo Dickscheid
Timo Dickscheid
### What is the problem? I created a remote RIA store using `ria+ssh` protocol. Creation of the remote works without errors and results in the appropriate structure on the ssh...
siibra had a serious bug when transforming bounding boxes: Both `.warp` and `.transform` would create the new bounding box by just transforming the min- and max point. But since the...
siibra Point objects may - though in rare cases - have been initialized with `space=None`. The current siibra implementation of `Point` will fail at several places, since it often assumes...
siibra knows some data features which have "hybrid" anatomical anchors including both a location and region specification. An example are the layer wise cell densities from BigBrain optical patches, which...
Requested by TVB modelers: allow interpolation of data features to provide full brain coverage, e.g. for neurotransmitter receptors.
In the current implementation [c72ece9](https://github.com/FZJ-INM1-BDA/siibra-python/commit/c72ece94cf5f49b51bf9a6be106ae73d1b8af7ae), the siibra.volumes.from_pointset method seems to have two issues: - [x] It sets a label value to the pixels before gaussian smoothing, but the intended operation...
It should be possible to launch the viewer via URL scheme given one of - a coordinate location - a brain region - a parcellation map - a space (->...
If a neuroglancer mesh provider is linked to a parcellation map, and no label is given for fetching mesh fragments, collect them across all labels known in the parcellation instead...