dammit
dammit copied to clipboard
dib-lab
just annotate it, dammit!
NotImplementedError: doit.cmd_base.py:TaskLoader was removed on 0.36.0, use TaskLoader2 instead This primary error turns up every time I call on DAMMIT. Maybe this implies that DAMMIT code needs updating from TaskLoader...
Hi Camille, I installed dammit, but I get this error when I try to install databases. How can I fix it? Thanks dammit databases --install --database-dir /cluster_data/home/genomic/software/conda_env/dammit/databases_dir --busco-group metazoa #...
I have BUSCOv5.2.2 installed via conda and the metazoa busco database included in the database folder I point to with --database-dir. When attempting to execute the annotate step, it looks...
Hi! I just tried to reinstall the databases which fails in the step ``` curl -o aa_seq_euk.fasta.gz ftp://cegg.unige.ch/OrthoDB8/Eukaryotes/FASTA/aa_seq_euk.fasta.gz curl: (28) Failed to connect to cegg.unige.ch port 21: Connection timed out...
I am unable to resolve the issues below. please advise !! - [ ] download:Pfam-A.hmm.gz: * Cmd: `curl -o Pfam-A.hmm.gz ftp://ftp.ebi.ac.uk/pub/databases/Pfam/releases/Pfam28.0/Pfam-A.hmm.gz` * Python: function check_hash - [ ] hmmpress:Pfam-A.hmm: *...
Hi Camille. I installed dammit with bioconda, followed instructions, downloaded databases. When running dammit with the command below I am getting the error above (and below). I will continue trying...
I've had a number of troubles getting dammit installed and working on my MacOS environment. I have miniconda3 installed and download dammit into a new environment using the following: ```...
