Daniel Golden

Hi there, I'm hoping to generate a circular plot to represent a number of data points associated with several selections of genes. Basically, I want to be able to make...

Kraken2_build step stalling

7

Hi there, I'm continuing to troubleshoot the db-update process for a kraken2 database, and I've hit a wall at the kraken2_build step. The pipeline doesn't throw any errors; it just...

More detail on classification % and taxonomy issue for Kraken2

8

Hi again! My supervisor and I have been troubleshooting our efforts to update the GTDB_release207 pre-made custom database with a selection of genomes from JGI GOLD (see previous issue #29)....

Missing FASTA file paths from bac120 and ar122 GTDB metadata

1

Hi there, I've managed to replicate the Kraken2 database creation process with the toy dataset as described in the ReadMe file, but I've run into a snag doing the same...

Classified % went down after I added genomes that should be informative

1

Hi there, I'm seeing some unexpected results from an update I recently ran on my kraken2 database. I started with a database drawing on sequence data from ~120,000 genomes, and...