dbeslic

Hello, is there an easy option to show the single amino acid scores for each de novo prediction? Currently (Update version 0.0.1), the result file only shows the peptide score...

Export MGF with annotated fragment ions?

1

Hi! Is it possible to export the mgf file with the identified fragment ions? I run a database search via DeNovoGUI using MSGF+ & XTandem!, and want a mgf with...

[CLI]: PIL.UnidentifiedImageError using wandb logger with pytorch lightning

3

### Describe the bug Using wandb as logger of my pytorch lightning trainer causes a PIL.UnidentifiedImageError, although the images are not corrupted. I added a manual check for corrupted images...

Compute SoftDTWLossPyTorch with normalization option and time series of different lengths

1

**Describe the bug** Hello, I want to use the SoftDTWLoss with normalization (Soft-DTW divergence) for comparing predicted time series of different length. It seems to throw this error. ``` File...

parquest file format

1

Dear authors, I used your datasets on huggingface to train InstaNovo. As I see it, you only accept .csv and .ipc files for training. Could you add .parquet files as...

Key error - 'mean_qscore'

10

Hello, I'm trying to basecall some reads I generated with squigulator. `buttery-eel -i results/zymo-human/passed-1K.blow5 -o results/zymo-human/passed-1K-squigulator.fastq -x cuda:all -g resources/ont-guppy-6_5_7/bin/ --config dna_r10.4.1_e8.2_400bps_sup.cfg --port 8020 --slow5_threads 128` When trying to basecall...