msms

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-Strace option gives exception

1

Hi Greg I tested out the -Strace option today and noticed that the code gives an exception under a very specific situation. First, I simulated two trajectories using the -oTrace...

ngarud

Command line: msms 60 10000 -N 10000 -t 40 -SI tbs 1 0.0001 -Sp 0.500 -Smark -SFC -SAA tbs -SAa tbs -IT 3 1 0 20 0.02 20 0.04 20...

lormond

Request to add demography + selection feature in a simplified case

1

At the moment, it seems that if we want to model a time-variant demographic scenario and selection together, we can only do so by conditioning on the starting time and...

ngarud

-oOC outputs numbers larger than the sample size

1

In the manual it is specified that -oOC returns the number of different mutational origins in the sample, and it is stressed that it is the origins number in the...

paula-tataru

Time sampled data

2

With recombination, time sampled runs using the -IT switch with t3 of 0.1 give the following error report: Exception in thread "main" java.lang.RuntimeException: ARG ran past the time bound of...

lormond