dcarbajo

It seems like after upgrade to R version 4.2.0, the following warning pops up, in case you want to check it: ``` Warning message: `spread_()` was deprecated in tidyr 1.2.0....

chordDiagram not plotting arrow when direction.type includes "diffHeight" and input data frame has 2 rows

3

After much testing with `chordDiagram` (circlize_0.4.13), it becomes pretty obvious that it does not work as expected when the input data frame contains only 2 rows, and the `direction.type` parameter...

`column_order` is ignored when `column_split` is used

5

I have a heat map like this, where I apply `column_order` to obtain the order of columns that I want (with `NoT` group _before_ `LTR` group): ![Screenshot 2024-02-23 at 12...

Given a simple legend with a pch inside, of the form: ``` lgd_sig

Differences in counts compared to MIXCR results, and out-of-frame CDR3 handling

8

Hello again! This is a follow-up to issue #247, thank you so much for your insights there! So I managed to run TRUST4 on my SMARTer data with the following...

How to run TRUST4 with multiple paired-end read files

5

Hi @mourisl I have cases where I have multiple `-1` files and corresponding `-2` files (not just one and one). I was wondering if there is a way to send...

Best way to run TRUST4 on TCR-sequencing data obtained from the Illumina MiSeq platform

1

Hello again! I want to process the sequencing data obtained by Croce _et al_ in **"Phage display profiling of CDR3β loops enables machine learning predictions of NY-ESO-1 specific TCRs"** with...