Daniel Dimitrov
Daniel Dimitrov
PS. I assume you might be using the `.raw` of your data, instead of the X
Hi @Zach-Sten, What do you mean by the factors in each view being scaled? In short, MISTy does not necessarily work with factors, but rather you can think of it...
Hi @wgao688, I bumped the python and numpy versions in the last patch, so it might be causing some inconsistencies in some environments. I will try to investigate soon (I'm...
Hi @WeipengMO, I made some changes to align the function a bit more to the rest in liana, would you like to have a look and let me know what...
Hi @WeipengMO, The only thing I'm not 100% convinced of is the `groupby` parameter and saving the colours to the anndata object. It makes the function specific to the ligand-receptor/single-cell...
Hi @sidrahmaryam-cyber, I assume that it's an issue with a confilict in testthat versions A solution is to install liana with a fresh R version (e.g. conda environment) See these...
Hi @sidrahmaryam-cyber, In a replicated issue the author said that this worked for them by installing via source - e.g. glone and install locally. Hope this helps.
I have addressed this in the update that I will push today.
Hi @HMU-lyz, I'm not sure I understand the issue 100%, but I assume you wonder why the receptor is set to FALSE given that the expression proportion for ERBB2 is...
Hi @dertrotl, This looks like a versioning issue or perhaps a format issue with the input matrix. Can you double check if your .X matrix is a csr_matrix or alternatively...