Davis McCarthy

icon indicating a website link https://www.svi.edu.au/research_themes/bioinformatics_and_cellular_genomics

icon company St Vincent's Institute of Medical Research and the University of Melbourne icon location Melbourne, Australia icon location Lab Head, Bioinformatics and Cellular Genomics

Results 4 issues of Davis McCarthy

Ouija not working w/ SCESet object

1 comment

Exciting to try this out! I didn't have any joy though, applying ouija to an SCESet object (see attached pic). Looks like ouija could be clobbering the scater NAMESPACE on...

Quantification of scRNA-seq data with UMIs?

16 comment

Hi Salmon team Are there plans afoot to support quantification of scRNA-seq data with unique molecular identifiers (UMIs)? UMIs are very commonly used in scRNA-seq data now, and correct quantification...

Refactor SCESet to use SummarizedExperiment rather than ExpressionSet

4 comment

Recommended after speaking with Martin Morgan.

Add basic support for MultiAssayExperiment class

1 comment