Davis McCarthy

icon indicating a website link https://www.svi.edu.au/research_themes/bioinformatics_and_cellular_genomics

icon company St Vincent's Institute of Medical Research and the University of Melbourne icon location Melbourne, Australia icon location Lab Head, Bioinformatics and Cellular Genomics

Results 4 comments of Davis McCarthy

pheatmap in rmote

Hi Ryan and @taeyoungh, I've noticed this same behaviour recently. `rmote` is working perfectly for "simple" ggplot objects (i.e. just one plot, whatever the style) and for base R plots...

Quantification of scRNA-seq data with UMIs?

Thanks, both, for your thoughts here. As I understand it, current UMI quantification approaches take a BAM file with read alignments and then (hopefully in some smart way) count unique...

Add basic support for MultiAssayExperiment class

Leaving this for the next release of the package. A substantial effort required.

scRNA-based variants ?

Hi ahy1221, Thanks for your interest in cardelino! You are right that obtaining a set of reliable variants for clonal inference for scRNA-seq data is a challenge (not such a...