VISOR

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calculate ground truth copy number profile from HACk.bed

2

Dear Davide, Thanks for your great work of VISOR! We used visor to simulate WGS data in bam format to test if our CNV detection method works good. Now we...

Jiayi-Wang-Joey

Definition of oriantation region of breakpoints

1

Hi, Thank you for developed such a great tool. How can I specify variant direction using VISOR according to VCF4.2? I am a little bit confusued about HACk, when want...

infotmatician

VISOR SHORtS for simulating pair-end data

1

Dear @davidebolo1993 , Thanks your for this useful tool. I have a question about simulating illumina sequencing data using VISOR SHORtS. Firt, using the same insertion bed file for simulating...

lx-1011

More flexible read identities for LASeR simulations

1

Hello. Thank you for this wonderful tool. I would like to simulate long read data sets with different read qualities. However, because the badread identity arguments are limited to integers,...

tomvanschaik

Inquiry on genotype of SVs

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Hello! I am using VISOR to simulate SVs and reads following the pipeline specificated in the documentation page. I am using these simulations in order to perform a benchmark of...

ngaitan55

New form of variation (I think) - non-reciprocal homoeologous exchange

4

Hi Davide, This is really a feature request. We've been using VISOR and it has been great! We are working on a polyploid (allo-tetraploid) plant genome - Brassica napus. This...

agolicz

LASeR issue

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Hello, I followed the step that you suggested but when generating reads from the fasta files, I get an error after the following command: `VISOR LASeR -g chr1_t2t.fa -s sims_small/...

asylvz