VISOR SHORtS for simulating pair-end data

[lx-1011]

Dear @davidebolo1993 , Thanks your for this useful tool. I have a question about simulating illumina sequencing data using VISOR SHORtS. Firt, using the same insertion bed file for simulating long-read and short-read sequencing data, i found that most of insertion could not be simulated in short-read data, like that

#VISOR HACk -g ref.fa -b ins.bed -o ./ins.hack.out #VISOR SHORtS -s ins.hack.out/ -b shorts.laser.simple.chr1.bed -g ref.fa -o ./SR.ins.laser.out --threads 10 --coverage 50 Do you have any suggestions on that? Thank you so much Lixin