David Steinberg
David Steinberg
Can we support VCFs with multiple contigs in them? - [ ] Find a VCF with multiple contigs - [ ] Add to tests/data/variants and run nosetests - [ ]...
If someone were to add an uncompressed VCF file, we could try preparing it for them before add it as a variant set. This would require creating the compressed file,...
To give us the confidence we can handle a variety of VCF filter types, we ought to add a VCF that better tests out the new fields. This would be...
Some useful subset of gencode should be added to the example data. This will require: - [ ] editing the gencode gff3 mapped against grch38 to select a subset of...
We currently provide example data and a reference to ease startup. With the addition of sequence annotations API these are some proposed data that the server could ship with. These...
A message returning the result of a write operation while modifying the registry would be helpful. `A new dataset with id "abx23" has been added".
Given we are not using randomly generated identifiers we need to take care not to leak private data. For example, a read group might be named by a patient name....
This issue is meant to capture the long term role of ontologies in the server. The capacity in which we are using ontologies is very simple, in that we only...
I just observed a problem trying to specify my own config.py, in that it did not respect the relative path I was executing from. This may be due to using...