David Steinberg

Results 120 issues of David Steinberg

The `make clean` function was for when the schemas were used to build documentation only. It needs to be updated to delete all build artifacts, or document its more limited...

Documentation
Infrastructure

The schemas proto could be packaged for node by including a well formed package.json.

Documentation
Infrastructure

Package compiled protobuf for R.

Documentation
Infrastructure

This issue is meant to spark discussion regarding what will be needed, if anything, to properly model single cell RNA samples: what ontologies will need to be used, and whether...

RNAseq
Discussion

Sometimes one receives an RNA expression table with genes and samples connected by some expression level. In the case when the units are not known, one can specify this using...

RNAseq

JSON Content-Type is the only allowed serialization protocol. This issue is meant to capture discussion about which, if any other Content-Types to negotiate. For previous discussion see https://github.com/ga4gh/ga4gh-server/issues/526

Discussion

Timestamps are available across the API and this PR replaces the mixture of timestamp implementations by settling on ISO 8601. Created and updated fields were added to the dataset, feature,...

ready
in progress

This PR enables variant call data to be queried directly. Currently, call data are only made available in the variant message itself, which makes large sample sets difficult to work...

ready
in progress
API Consistency

TODO * Edit human-readable documentation. Close #804

in progress

Allows us to take advantage of newer versions of the protobuf module without modifying the requirements. If a specific version of the module is required at release, this can be...

in progress