David Steinberg

Results 120 issues of David Steinberg

This PR was automatically created by Snyk using the credentials of a real user.Snyk has created this PR to fix one or more vulnerable packages in the `pip` dependencies of...

For messages that can be backed directly by a file (BAM for readgroupset, VCF for variants) we could provide a field named `source_uri`, as has been added to the Reference...

API Consistency

The data model should provide a way to group individuals. It currently groups Samples and Individuals, but being able to make statements about groups should be included as a first...

MetadataTaskTeam

As suggested here https://github.com/ga4gh/schemas/pull/706#discussion-diff-85609058R178 Positions can be specified using unsigned, as opposed to signed integers since genomic coordinates are positive. @reece @diekhans ?

Discussion

**Is your feature request related to a problem? Please describe.** When the screen size is below some number or zoom has increased element size the Versions tab of a workflow...

enhancement
gui

### Desired behaviour The edit caret is hidden on textareas when they are not in edit mode. ### Expected behaviour When browsing a workflow's files, an edit caret only shows...

enhancement
gui
pick-me-up

**Is your feature request related to a problem? Please describe.** Making citations from Dockstore workflows is not obvious and easy, even with the DOI feature. **Describe the solution you'd like**...

enhancement
web-service
gui
ux-design

So that a username/password combination can be provided by environment variables to the service. All endpoints (except service info?) should be under auth. Close with tests that demonstrate the server...

Some test harness should be added to make it easier to write tests, as well as unit tests based on the current test data.

Add a note to the documentation that the user running workflow-service needs to be in the docker group in order to run tests.