David McGaughey

Perhaps PAGA would be better? Slingshot is super slow. Literally been running for days on local Mac Pro.

Two guides to bring over PAGA into R: - https://lazappi.github.io/phd-thesis-analysis/05-paga.html#paga - https://romanhaa.github.io/blog/paga_to_r/

Attempted to use RPCs/progenitors for each terminal type. Was a mess. Will remove and use RPC/progenitor in its own subset.

Cool, just wanted to let you know. You already know this, but this is an amazing package. Once you add color labels this will be the best heatmap-er.

Same issue ``` > library(ggbio) Loading required package: BiocGenerics Loading required package: parallel Attaching package: ‘BiocGenerics’ The following objects are masked from ‘package:parallel’: clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply,...

Yep, that was it. Didn't realize I was running the github version. Thanks. An extremely annoying error message....as it is not very informative.