Dario Beraldi

Thanks @chrismacdermaid, I was going to suggest that.

Can you try to see if the test data run from start to finish? Just to see if the issue is with the installation or something unexpected with your data.

Hi- Sorry about that. Can you show the commands you used to install cnv_facets? The [documentation](https://github.com/dariober/cnv_facets#install-via-bioconda-recommended) has: ``` conda create -n my_project conda activate my_project conda install -c bioconda -c...

Unfortunately, R doesn't say which line caused the error. I suspect the problem is not with the pileup file but either with the annotation or the targets file. To check...

Hi- sorry about that. I need to revise the installation recipe to update it to work with more recent versions. For the time being, the following should work, but I...

Hi- Thanks for your interest! I'll look into upgrading facets to v0.6.1 although I don't think the core CNV detection has changed since 0.5.14.

Hi- sorry about that. My first guess is that you don't have permission to write in the directory where you direct the output files. However, cnv_facets seems to have created...

@gaom001 Can you give me more information? What command did you run and what error message did you get?

It seems to me that you are trying to write your output in a directory where you don't have permission to write. Try something like: ``` cnv_facets.R -o ~/cvn_out/EVT_cnv ```...

> snp-pileup: error while loading shared libraries: libcrypto.so.1.0.0 This suggests that, at least, you passed the permission error from before. It suggests that `snp-pileup` is not properly installed. How did...