Dario Beraldi
cutadapt 3.5, python 3.9.7, installed with conda. The file produced with option `--info-file` has 4 columns if the adapter was not found and 11 if it was found. It would...
`geom_text_repel` and `geom_label_repel` do not "see" labels plotted by other calls of geom_*_repel resulting in overlapping labels. Here I plot the same text twice using `geom_text_repel`, once in blue and...
`setConfig` can set an invalid key thus making ASCIIGenome stuck in error state until the user re-sets the offending key to a valid one. E.g.: ``` ASCIIGenome -r chr7:5529435-5529716 test_data/ear045.oxBS.actb.bam...
Currently (v1.15), `goto` accepts one argument as `chrom[:from[-to]]`. It would be convenient to enable `from` and `to` to be space separated so you can copy & paste from *e.g.* R...
Currently (v1.15), `find` searches only one track and defaults to the first suitable one. Maybe better is to allow a list of track-capturing regexes (*i.e.*, like most other commands), search...
Loading several tracks at the start sets some of them to height 0 making them invisible. Tracks are actually loaded fine and they can be seen with `trackHeight 1` but...
Loading and invalid file should give a clearer message of failure. Currently the message Cannot add ... skipping" is immediately cleared by a fresh screen.
ASCIIGenome CEU.exon.2010_06.genotypes.vcf print -full -sys 'cut -f1-20' * Expected behavior: slice columns 1-20 and print line in full, unclipped. * Actual behavior: columns are sliced but printed clipped to screen...
It appears `TabixReader` cannot read from ftp, see https://github.com/samtools/htsjdk/issues/797. This means remote tabix files on ftp cannot be read remotely. Oops, duplicate of issue #2
Files in plain wig format are not handled correctly (bigWig ok). To load wig files you probably need to have the correct genome set since this is necessary to convert...