Dan Li

simpleError in validObject(.Object): invalid class “DimReduc” object: dimensions for ‘cell.embeddings’ must be in order

3

When run the tutorial "https://greenleaflab.github.io/ArchR_2020/Ex-Analyze-Multiome.html" ```{r} #Add Clusters proj

Hello: Is there a way to check the model parameters ? Thanks ```{r} library(ISLR2) library(torch) library(luz) # high-level interface for torch library(torchvision) # for datasets and image transformation library(torchdatasets) #...

Why the word_index of the dictionary of `imdb_dataset` are not unique?

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Hello: Why the word_index of the dictionary of `imdb_dataset` are not unique? Thanks ```{r} max_features

Error: Will not launch future due to the size of the globals 4.98 GiB exceeds 2.93 GiB

1

Hello, Thanks a lot for this great tool! How can I resolve the error when I run the following code? ```{r} cellchat

Hello: ```{r} archr.obj

Hello I install `cuda` using `conda install cuda -c nvidia` ```bash nvcc --version nvcc: NVIDIA (R) Cuda compiler driver Copyright (c) 2005-2023 NVIDIA Corporation Built on Wed_Feb__8_05:53:42_Coordinated_Universal_Time_2023 Cuda compilation tools,...

How can I delete or rotate the legend of `sc.pl.stacked_violin`?

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Hello: How can I delete or rotate or change the position of the legend of `sc.pl.stacked_violin`?  Thanks

`sc.pl.stacked_violin`, Is it also possible to add tiny y-axis scale bars to the stacked_violin(`swap_axes = True`)?

3

Hello, Is it also possible to add tiny y-axis scale bars to the stacked_violin(`swap_axes = True`), to indicate the expression levels? Thanks Dan

`heatmapCodex`: ERROR while rich displaying an object: Error in grid.Call.graphics(C_downvppath, name$path, name$name, strict): Viewport 'Norm. Enrichment -log10(P-adj) [0-Max]_heatmap_body_1_1' was not found

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Hello: ```{r} projHeme5

How to generate subplots?

1

Hello: I want to plot umap plots for each sample, and arrange the subplots in a row. But there is no output, could you please let me know what is...