Dan Li
Dan Li
Hello Could you please let me know how to install `matplotplusplus` using `xrepo`? ```bash xrepo install matplotplusplus checking for Microsoft Visual Studio (x64) version ... 2022 note: install or modify...
Hello, I run the code in https://github.com/fluentpython/example-code-2e/tree/master/24-class-metaprog/checked/metaclass/checked_demo.py ``` #!/usr/bin/env python3 # tag::MOVIE_DEMO[] from checkedlib import Checked class Movie(Checked): title: str year: int box_office: float if __name__ == '__main__': movie =...
Hello, How can I plot the heatmap with the fold changes of ChIP-seq occupancy levels of 2 samples?  Thanks
Hello When I install `macs2` ``` python -m pip install MACS2 1 09/14/2023 10:14:38 AM Collecting MACS2 Using cached MACS2-2.2.9.1.tar.gz (2.0 MB) Installing build dependencies ... done Getting requirements to...
Hello Thanks for this great tool. I used `plotAnnoBar` to get the feature distributions  How can I get the digital percentages of the gene components? Thanks
Hello I run the tutorial (https://raw.githack.com/bioFAM/MOFA2_tutorials/master/R_tutorials/CLL.html) ``` library(MOFA2) library(MOFAdata) library(data.table) library(ggplot2) library(tidyverse) utils::data("CLL_data") MOFAobject
Hello: I saw the tutorial for Single Cell Multiome analysis (https://raw.githack.com/bioFAM/MOFA2_tutorials/master/R_tutorials/10x_scRNA_scATAC.html), could I analyze bulk RNAseq and bulk ATACseq together using `MOFA2`? Is there a tutorial for this kind of...
Hello: When I run `velocyto run10x`: ``` velocyto run10x -@ 64 -m /lila/data/chen/dan/ref/gtf/mm10_rmsk.gtf \ TCD_1 \ /lila/data/chen/dan/ref/gtf/Mus_musculus.GRCm38.93.gtf ``` I found this error: ``` Traceback (most recent call last): File "/home/lid/miniconda3/bin/velocyto",...
Hi This link `https://www.uni-tuebingen.de/fileadmin/Uni_Tuebingen/SFB/SFB_833/A_Bereich/A1/Christoph_Scheepers_-_Statistikworkshop.pdf` doesn't work anymore. Thanks
Usually, we use a symmetric matrix for the `Sigma` parameter of `MASS::mvrnorm` function. ``` # Fixed correlation D_correlation = data.frame(MASS::mvrnorm(30, mu = c(0.9, 0.9), Sigma = matrix(c(1, 0.8, 1, 0.8),...