Daniela Nachmanson

BAM causing error with QUILT-HLA

2

Hello! One more problem I am running into. QUILT-HLA is working great on the test BAM files but I have been having some troubles with my BAM files. Here I...

I'm attempting to run combat using just categorical variables. ``` pheno_dat_matrix = dmatrix("~ Cell_Line + GPL + Resistance", pheno_dat, return_type="dataframe") normalized = combat.combat(gse_eight_ten_twelve, pheno_dat["Batch"], pheno_dat_matrix) ``` I keep receiving an...

Hi there, Is Conpair compatible with analysis with the rn6 rat genome? It looks like I just need to provide a reference genome and generate a markers file, is this...