Chen Ying

Hi @ChaseWLW , thanks for showing your interest in the data resource. Yes, we do have plans to include data generated using the RNA004 kit for future releases. Stay tuned...

Hi, Sorry for getting back lately. For the sequin reference, you may download the fasta and gtf file using the links below: gtf file: http://sg-nex-data.s3.amazonaws.com/data/annotations/gtf_file/hg38_sequins_SIRV_ERCCs_longSIRVs_v5_reformatted.gtf this is the complete gtf...

Hi @VikArz02 , thanks for the feedback! We have now added the data.info files into the m6Anet folder, please have a look and let us know if there are further...

Hi @alexyfyf , Thanks for pointing out the problems of those files. I have corrected those two files and updated them in the S3 bucket. Please have a look. Please...

Hi Alex, Thanks for the heads-up again and sharing your code for correcting that. I think that's good already. I have uploaded the corrected version just now. Thank you Regards,...

Hi @rob-p , Thanks for letting us know about the issue. The corrupted file might be related to me using talon_reformat_gtf to reformat the gtf file. I have now provided...

Hi @NikoLichi , sorry for getting back lately, we have been looking into the issue and have pushed a fix in a separate branch: https://github.com/GoekeLab/bambu/tree/patch_bigsamples where we have rewritten the...

Hi @NikoLichi , sorry for the bug, I have pushed a fix to add in the missing function in the patch_bigsamples branch. Could you help to try again to see...

Hi @NikoLichi , It's great to hear back and the error means that the changes that I made is working, but there is a small typo in the code of...

Hi @NikoLichi , Thanks for getting back with the good news, I am happy that the patch branch works. For your first test using subset data, the code all looks...