Chen Ying issues

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Results 4 issues of


                                            Chen Ying

remove partial length counts report as they are not so useful and can be easily get by total counts minus full length counts

The use of correct junction to exon differences in coordinates in createExonsByReadClass could introduce errors

When trying to run processReads on one of the samples, I found that this step in contructReadClasses might introduce errors for very small exons (1bp exon). Before correcting: [3] 12...

bug

Bug fix plot bambu

- bug fix for plotPCA where PC percentage are corrected as pointed out by issue #383 - add gene annotation plot on top of transcript annotation as requested by issue...

include documentation for fusion mode

- update readme to include a section on fusion mode - re-format the release history