Chen Ying
Chen Ying
Hi @niradsp Yes, we have tested it on PacBio data, and it worked pretty well. For those genes that are not showing up, are they novel genes? If yes, you...
Hi @niradsp, Glad that you finally got your data. For the cryptic exon isoform, you may check if there are full length or unique support for further evidence before more...
Hi @imilenkovic , unfortunately we don't provide a visualization for gene annotation on top of transcripts for now. We do provide visualization for gene level annotation and expression, but currently...
Hi @imilenkovic , we have fixed the bug for visualization of gene level annotation and expression. Below are the codes that you can follow: `seGene
Hi @JintaoL666 , I have replied you through the email. Do let us know if there are furture questions. Btw, I would encourage you to open a github issue in...
Hi @Yumy526 , 你的上一个提问格式有点问题，我们这边看到的全是乱码。 你可能需要重新发一遍 如果不太方便的话，你也可以直接发中文，谢谢！ Ying
Hi here, sorry for the late reply, I tested the data with the most recent branch, and it seems that with the most recent version of bambu where degradation bias...
Hi, have you tried to set the degradation mode off by running the following: ``` se
Hi @Kiliankleemann , thanks for letting us know your doubts. The naming convention is actually based on our lab sample generation, 1. the replicate number "Rep", is named based on...
Hi @Kiliankleemann thanks for letting us know the problem. For your first comment, could you share which sample has this problem? I have tried it with one sample, and it...