C. Titus Brown

hot take: you need the contig sequence itself so that it can be output with `-o`, right? and hashing the contigs should not be a big computational deal...?

moving script into plugin: [`sourmash_plugin_hashannot`] command `extract_surrounding`, being added in https://github.com/sourmash-bio/sourmash_plugin_hashannot/pull/1

## you can also run it in jupyterlite! [juptyerlite docs](https://jupyterlite.readthedocs.io/en/stable/) via @luizirber - go to https://lesteve.github.io/jupyterlite-pyodide-dev/ and enter: ```python import micropip await micropip.install("sourmash") import sourmash ``` => fun, profit!

keeps on improvin' https://tutorials.thecoatlessprofessor.com/next-gen-data-science-education-wasm/

Got this running today in jupyterlite:  The 'sourmash' shim used with %run is: ```python import sys, glob from sourmash.__main__ import main args = [] for x in sys.argv[1:]: res...

There are quite a few clustering issues in the issue tracker, and I've put a lot of time in over the years! I'll link in those issues as I find...

> I'm really excited about having a dedicated `cluster` function! > > A couple thoughts: > > * Can we enable clustering from pre-calculated distances, e.g. from output of `prefetch`,...

hot take, I think the sourmash component of this functionality should focus on calculating and outputting hash overlaps (and related metrics) and then large scale clustering should be Somebody Else's...

The [`betterplot` plugin](https://github.com/sourmash-bio/sourmash_plugin_betterplot/) supports cluster extraction via dendrogram cuts in the `plot2` command. It's nice!

a start here: https://github.com/ctb/2024-sourmash-example-plots used for talk: https://osf.io/mkgx4/