C. Titus Brown
C. Titus Brown
in the meantime, you can use `f_weighted_at_rank * total_weighted_hashes * scaled` which should be the same number!
What I wrote over in the genome-grist docs: This file contains at least 8 columns, with the headers `ident` and `superkingdom`, `phylum`,`class`,`order`,`family`,`genus`,`species`.
see also taxonkit info https://github.com/sourmash-bio/sourmash/issues/1851
this topic, plus discussions about NCBI, GTDB, LINS, and ICTV taxonomies could usefully go in either https://sourmash.readthedocs.io/en/latest/databases-advanced.html or https://sourmash.readthedocs.io/en/latest/sourmash-internals.html#taxonomy-and-assigning-lineages. There's already some stuff in the latter location!
pypi page: https://pypi.org/project/sourmash-plugin-venn/ github page: https://github.com/sourmash-bio/sourmash_plugin_venn - web site set to betterplot plugin - github repo archived - last release mentions DEPRECATED - plugin entry points removed
per @ccbaumler - ATB is done! so it's a matter of posting and explaining.
@ccbaumler more here pls
ref also new assemblies? https://github.com/AllTheBacteria/AllTheBacteria/releases/tag/incremental_202408
they were not available for download because of a broken configuration/setup on our end - I think it's fixed. We still haven't posted them to the databases page but they...
> Been thinking. This could also be informative in identifying [QTLs](https://en.wikipedia.org/wiki/Quantitative_trait_locus) at the metapangenome level (or narrower) when comparing phenotypes. hot take response: that's already what the hashes themselves (hopefully)...