cstrlln
cstrlln
Same issue, did you manage to solve? thanks
in case it can help, managed to install velocyto by install boost with conda, and having conda session activate while running R and installing velocyto.
getting same error, any news?
> Hi, > Do you any suggestion for R on a server (not local R)? which files must be modified in order to make the velocito.R to work? > >...
Thanks I gave it a try and haven't been able to create the SFE object. Here is what I did: ``` library(SpatialFeatureExperiment) cellmeta
Thanks I'll try this, I guess I just need to understand the object construction better. Are there any columns that are looked for that have to have harcoded values, like...
It does seem that there is a slight missmatch between the cell id in the raw cellmeta and the names in the count matrix and segmentation. The rownames of expcounts...
Just wanted to say @mxardre solution worked for me as well.
@alikhuseynov I got side tracked trying another tool, so didn't test the suggestions yet but plan to try in the next couple weeks. I really think it might be the...
The file structure is very long but, just took a few screenshots. It looks to me that naming of files and columns might have changed substantially since the demo datasets....