velocyto.R icon indicating copy to clipboard operation
velocyto.R copied to clipboard

installation error on Rstudio sever

Open hmassalha opened this issue 5 years ago • 3 comments

Hi, I am using the Rstudio in a linux server. I am getting the following error when I try to install the velocyto.R:

`/usr/bin/ld: cannot find -lboost_filesystem /usr/bin/ld: cannot find -lboost_system collect2: error: ld returned 1 exit status make: *** [/apps/RH7U2/gnu/R/3.5.1/lib64/R/share/make/shlib.mk:6: velocyto.R.so] Error 1 ERROR: compilation failed for package ‘velocyto.R’

  • removing ‘/home/labs/shalev/hassanm/R/x86_64-pc-linux-gnu-library/3.5/velocyto.R’ Error: Failed to install 'velocyto.R' from GitHub: (converted from warning) installation of package '/tmp/RtmpO03ENE/file97f664f530a7/velocyto.R_0.6.tar.gz' had non-zero exit status`

Any suggestions? Thanks, HM

hmassalha avatar Aug 22 '19 09:08 hmassalha

Same issue, did you manage to solve? thanks

cstrlln avatar Sep 11 '19 22:09 cstrlln

in case it can help, managed to install velocyto by install boost with conda, and having conda session activate while running R and installing velocyto.

cstrlln avatar Sep 11 '19 22:09 cstrlln

Thanks, I contacted the IT unit and they did the job. HM

hmassalha avatar Sep 12 '19 09:09 hmassalha