Carlus Deneke

icon indicating a website link https://www.researchgate.net/profile/Carlus_Deneke

icon company German Federal Institute for Risk Assessment (BfR) icon location Berlin, Germany icon location Bioinformatician

Results 4 issues of Carlus Deneke

Enable protein query with tblastn

7 comment

Hi, is it feasable to use abricate for mass screening of protein sequences instead of genes (i.e. use tblastn instead of blastn)? Thanks, Carlus

enhancement

Programmatically create grapetree visualizations

4 comment

Hi, thanks for grapetree, we use it a lot by uploading a mstree and metadata to a local grapetree instance in the browser. However I wonder whether it is possible...

Problems installing latest grapetree

Hi, I am having problems installing the latest grapetree. * If i am using `pip install grapetree` I am not getting the latest version but v1.5 * If I force...

Problems with `.` in sample names

Hi, thanks for plasmidid, a very useful tool. I encountered a problem when sample names contain a `.` The program crashes and returns the following error messages: ``` ERROR in...