plasmidID
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Problems with `.` in sample names
Hi, thanks for plasmidid, a very useful tool.
I encountered a problem when sample names contain a .
The program crashes and returns the following error messages:
ERROR in Script plasmidID on or near line 863; exiting with status 1
MESSAGE:
See results_plsdb_test/GCA_019841085/logs/plasmidID.log for more information.
command:
blast_to_link.sh -i results_plsdb_test/GCA_019841085/E_marmotae/GCA_019841085.1/data/GCA_019841085.1".plasmids.blast" -I -l 20 -b 90
My command was
plasmidID -T 20 -c GCA_019841085.1.fasta -d plasmids.fna -s GCA_019841085.1 -g 'E_coli' -o results_test/GCA_019841085.1
When I remove the .
in the sample argument GCA_019841085.1
-> GCA_019841085
the program runs smoothly.
Still, I think it would be important to be able to name samples such as this is the offocial NCBI Refseq/Genbank naming convention (accession.version).
Thanks, Carlus
P.S.:
$ plasmidID --version
1.6.4