cr2106

AssertionError in conga.plotting.make_graph_vs_graph_logos()

1

Hi! I'm trying to run CoNGA on some B cell data. I get the `AssertionError` when I run `conga.plotting.make_graph_vs_graph_logos`: ``` ~/conga/conga/plotting.py in make_logo_plots(adata, nbrs_gex, nbrs_tcr, min_cluster_size, logo_pngfile, logo_genes, gene_logo_width, clusters_gex,...

Plot epitope specificity on GEX umap

1

Hello, would it be possible to plot TCR matching to database on GEX umap? Thank you for your help!

Compare multiple sample groups

7

Hello, I love CoNGA! Thank you for developing and making available to everyone such a great package! I am exploring CoNGA with multiple samples, and I was wondering if it...

design & constrast matrix

4

Hi, I'm running diffcyt via catalyst and I have some problems in setting up the design and contrast matrix. I have 144 samples divided into 4 conditions. I set up...