cr2106

Hi, Thank you for your answer! I manually added new columns in adata.obs containing other batch information (patient groups), as you suggested. Now, I would like to include the patient...

I added the batch column names in adata.obs and in adata.uns['batch_keys'] before computing GEX and TCR neighbor sets (If I do it before, I cannot reduce to a single cell...

They were not integers, I corrected this and it worked! I can see the patient groups next to the dendrograms, but I cannot say which color correspond to which group....